Monday 24 October 2011

St Pauls closed


You're almost certainly aware of the anti-capitalist protests around the world recently, and may be aware St Pauls Cathedral in London had to close for health and safety concerns. Normally I wouldn't care that much, there's even a great deal I disagree with the protesters about.

The reason I'm talking about this is that it's leader, the Reverend Knowles, made an annoying statement. He called the protesters "a lesser cause", and should show respect to their "more ancient institution". That's right, one of the Church of England's highest officials thinks the global economic problem, whether or not the protesters are exactly correct, is less important than their church services. Then justifies his point of view by saying it's older.

Ugh...

Friday 21 October 2011

End of the world

Remember six months a go when Harold Camping said the world would end? And then it didn't? You might also remember he tried to justify his error by claiming it was a "silent" judgement day, and the actual reckoning would happen on the 21/10/2011. That's today!

I don't know about you, but the weather here is a bit dire. Apart from that the apocalypse seems a little pleasant so far.


Monday 17 October 2011

I am very happy

And I have not a fucking clue as to why. I just woke up this morning feeling really positive. If i had to guess why it would be just being at Uni and really starting to study now. Right now I'm writing this in the Biomedical library, surrounded by my notes on the histology of the skin. It's unbelievably hard but I think it's making me happy.

I've always felt best when building things or solving puzzles, abstract or otherwise. Stuff like Lego when I was younger or redstone in Minecraft. For the first time I really feel academically challenged every single day, not just occasionally like in school. And I'm slowly edging my way into new social circles, it actually gives me goosebumps how weird and wonderful life is at the minute.

I'm going to force myself to post less stuff about medicine and Uni now, I wanna talk more about interests I've neglected as of late. That wraps up this post; stay tuned for regular programming!

Tuesday 11 October 2011

More Uni stuff

I really need to set aside time for blogging, Uni takes up all my time now. I'm writing this in a sandwich bar between lectures, it's so nice to really sit down. Alone. Without people.

I'm just out of my first anatomy class, you know, with cadavers. I was surprisingly uneasy at first, I never thought anything of the corpses beforehand. But when you walk in and see ~20 of them lying on tables it strikes you a bit. Although once the demonstrator really got into the detail it wasn't so bad, in fact it got really interesting. I still prefer the histology though, which is good considering I want to get into oncology.

That'll have to do for now, I'm slowly getting into the swing of things. Hopefully I'll get posting interesting stuff again soon.



Saturday 1 October 2011

So little time

It has been a week and a half since my last post! I just have no time during freshers! But it's over now, time to get into actual work. And I'm really excited.

At the start of the course I was terrified of hating medicine, even after all the work and suffering to get in to the thing. You see, everyone on the course is passionate about medicine as a clinical profession. Except me. My real love is science.

After getting a little stuck in, and seeing my mum as a carer today, I think I may start to like the health profession in its more traditional sense. Until then however, I'll still clutch to my hope of academia.

Course aside, Uni is fucking brilliant. New and old friends, clubs joined, fresh starts. I really want to get stuck in!

And lastly for David, who started today: medishuuuuuuuuunnnnnn

Wednesday 21 September 2011

I am finally here!

I've finally got the oppurtunity to sit down and blog! Every night since arriving here in Queens I've been so tiried i just slept, I'm in 9-5 everyday! Most people have no more than 10 hours a week!

But so far it has been fun, I'm very excited. The Med-School is awesome, the people are awesome and the accomodation is... ok. The folk on my floor are wonderfully amiable, but it's shared sanitaries. I was supposed to get en suite...

Today we did a First Aid course, it was fun if not a bit tedious. I've done it all before, it was like revision. The manager of the instructors however was wearing one of those copper bracelets. The ones that "rectify your aura" and "resonates with your natural frequency." And he's a qualified medic. Oh dear.

Saturday 17 September 2011

On the Republican candidates

The candidates for the 2012 Republican Presidential nomination are abysmal... All 3 of the front runners are young-Earth creationists and anti-science. The worst two are Michelle Bachmann and Rick Perry, the former against vaccinations for cervical cancer, the latter publicly praying for rain to alleviate drought and both avid deniers of human caused climate change.

It's actually so bad that Nobel Prize winning Paul Nurse, president of the Royal Society, wrote an editorial on the issue in this week's New Scientist. This is why politics should have more room for scientific discourse, the public needs to be swayed by actual evidence on issues like climate policy and science education as opposed to rhetoric as is so often the case.

Tuesday 13 September 2011

So true about funding

With all the cuts by the conservative government, I've had to defend science funding before. Phil Moriarty, from Sixty Symbols at Nottingham University, puts up a good case way more eloquently than I ever could.

Saturday 10 September 2011

Religion's manipulation of the young

Meet 4 year old Kanon. A preacher.


This makes me sad. It just shows how unfortunate it can be when children are exposed to one faith over another before being old enough to make up their own minds. It's disgusting how they cheer him on...

Thursday 8 September 2011

Richard Dawkin's new book

Richard Dawkins has a new book announced for the 4th of October, and this excited me because he is one of my favourite authors. He has a rare talent of being able to communicate complicated scientific ideas in an easily understandable and interesting way.

It's called "The Magic of Reality", and marks a significant departure from his usual works. Namely it's for kids, and from the sound of it it seems fantastic.

I think stuff like this is so important, most lovers of science were captivated by the wonder of science as children. It was the "Horrible Science" series that caught me. I got the one about bugs when I was 8, and loved science ever since. Hopefully "The Magic of Reality" will captivate a new generation like Horrible Science and Carl Sagan's Cosmos did before it.

Wednesday 7 September 2011

New Symphony of Science release

It's about the quantum world this time! Featuring Brian Cox, Michio Kaku, Stephen Hawking, Richard Feynmann and, oddly, Morgan Freeman. Frank Close appears briefly too, exciting for me because I've read some of his stuff. It's good.

Sunday 4 September 2011

I got into medicine!!!

I am so happy! 2 years of work finally paid off!

I got the call from Queen's University last night, and the wonderful lady gave me an offer!

I am so freaking excited, my halls are all sorted and I move up on the 18th!

All I still have to do is navigate the hell of UCAS Clearing...

Anyway, stuff to do! I'll blog more at Uni, but for now my life can be summarised thus: excitement and confusion!


Tuesday 30 August 2011

Skyrim will have gay marriage

Anyone who knows me will know that I freaking loved the Elder Scrolls IV: Oblivion and am so excited for the sequel, Skyrim, to be released in November. Apparently the game let's you have relationships with NPCs, even marry them (developers are keen to note it's not like Fable)! You can even marry the same sex, putting the province of Skyrim ahead of most US states in terms of equality.

No doubt about it, I'm getting me an elf. Sexy buggers. Hopefully something like Zevran from Dragonage. ;)


Friday 26 August 2011

Diamond planet discovered


I just saw this and thought it was awesome, something I've only ever seen in science fiction. Astronomers have found a planet essentially made of diamond.

Oddly, it orbits around it's star really closely despite being really heavy. Closer than earth, but heavier than Jupiter.

Because of its immense density it's probably crystalline and contains heavier common elements. Like carbon. What's crystalline carbon?

That's right. diamond. A whole planet, 5 times the size of the earth, largely made of diamond.

University plans

I'm pretty sure of my position for university now. I've firmed by genetics offer at QUB, so I'll probably be doing that course. I do know however that I'm on the medicine reserve list, of about 30 people. From my results I'm estimating I'm around 20-25, luckily my A* in chemistry gives me an edge. According to the admissions office last year the last offer went to someone with A*AAA (like me!) the second day of term.

You never know, I might still get in. But I'm happy enough with genetics and just want to get started now. Dammit, hurry up and end, summer!

Tuesday 23 August 2011

Exam system

Well, I got my grades, A*AAA. These may or may not get me into medicine at QUB, but that's not what this post is about. This post is about how awful the exam system is, in particular the grades.

If you look at university courses they are sometimes gruesomely over subscribed. From my own experience applying for medicine, almost every course I considered had 10x applicants to places. As such I didn't get in.

It is unreasonable and unfair to think we could reduce the number of applicants, however we can say we could reduce the waiting time. People spend months on end waiting for a decision, time better spent getting the grades. So instead I propose a new system.

Instead of dispensing letters as grades, give out a numbered rank, 5-6 significant figures. These are based on your total scaled uniform marks. So, someone with ABB might get 75.66. From this he could see was in the 75th best division of candidates, and ranked 66 within them. Whereas someone with A*A*AA might get 8.34. A numerical grade system along those lines.

Why do this? It provides massive differentiation between candidates. With this, applications can start on results day, and you could apply to as many courses as you liked. At the end of each day of this until the beginning of term, courses could take the candidates based on their grades. Now, instead of there being 6 classes of grades, there are several thousand. Day by day the courses fill up by candidates based purely on academic merit, no need for the bullshit subjectivity of interviews and personal statements.

Anyway, just an idea!


Friday 19 August 2011

De Grasse on telescope

PZ Myers linked this today, it is so true.



The telescope is so important but for largely for reasons people don't realise. This scares me, science won't get the funding for the projects like the LHC or Hubble in the future unless the public understands, even if vague and unfounded, what questions these things answer and why.

It would be great if there were scientists and engineers in the American Congress, instead of just lawyers and businessmen...

Sunday 14 August 2011

The Selfish Gene, the musical!


I didn't believe this at first, but someone has actually turned Richard Dawkin's The Selfish Gene into a musical. Don't believe me?

The book itself is about the idea of selection of genes and not necessarily individuals or species, as well as the evolution of altruism through "selfish" genes. In the musical, an Oxford professor teaches this to the audience by using the Adamson Family's daily struggles as an example.

I am soooooo happy about this, science needs more representation in the arts. Brian Cox does a good lecture on the subject. It is a fantastic book, and hopefully stuff like this can fight the general ignorance towards evolution.

Thursday 11 August 2011

Dammit, malnourished ancestors!

Usually I love evolution, but not today. In keeping with project Defatbastardisation I'm trying to reduce calorie intake. Which is hard! I've never wanted to stuff my face so much before!

All thanks to my stupid ancestors, not eating whatever they wanted. They had to inconvenience me by eating only what was available. Of course this meant we developed an intrinsic loving of energy rich fatty and sweet foods. And I can't eat them, despite the craving!

Well, back to resenting Darwin and these chocolate digestives...

Monday 8 August 2011

Project Defatbastardisation

I'll use this blog to chart my weekly progress through my diet-thing. In theory, if I consume less calories than I use excess weight should be lost. Recording it here on a weekly basis with calories consumed/bodily mass and correlations should provide motivation.

After writing this I realise how concerning it is that I have to use science to do anything... oh dear.

Sunday 7 August 2011

Beautiful picture


Brian Cox tweeted this, taken by the docked Atlantis crew. I thought it was just beautiful, and wanted to share it.

You can see the green sheen of cosmic rays on the atmosphere, in the far distance the stars just make out the vague image of a galactic spiral arm and it's all framed by the International Space Station, scientific advancement through international cooperation. Just beautiful.

Friday 5 August 2011

Governor Perry's Prayer Rally


Tomorrow Governor Perry of Texas USA is holding a prayer rally in Austin, that is strictly Christian. Adverts for the event included the state seal of Texas, and therefore Perry is guilty of a branch of US government endorsing one religious view over another. This is of course is unconstitutional according to American law.

Unfortunately the Freedom From Religion Foundation's case against him was dismissed. Which is silly, if he held an Islamic rally there would be no problem by the Christian majority in seeing the illegality. Anyway.

It makes you wonder the meaning of this rally. Does Governor Perry doubt his abilities? "Dear Lord, I as the governor of Texas am quite unable to govern effectively. Therefore I request divine intervention to guide the policies I am too incompetent to implement. Amen."

Many of my favourite presenters of the Atheist Experience are heading there to protest, it is their home state after all. What is interesting though is that the Westboro Baptist Church are protesting too in some sort of bizarre unholy alliance.

Thursday 4 August 2011

Water on Mars?


Today NASA and the University of Arizona published an article in Science about their new findings from the Martian Reconnaissance Orbiter. These streaks in the image are on the southern hemisphere of Mars and supposedly left by flowing water.

The greatest evidence is that they disappear in the winter and reappear in summer, as one would expect with temperature fluctuations. They have an official announcement tonight, apparently to include fantastic images of the streaks changing with the seasons.

Why is this important? The proven presence of flowing water would hugely increase the chances of life on Mars. Though even if life was found, I'd be far from impressed.

I mean, unless it's radically different then it's probably from Earth. Bacteria could easily be exchanged between the two planets from celestial collisions. It'd be interesting, but only ground breaking if two separate abiogenesises occurred in the same Solar System.

Here's hoping for life on Titan.

Tuesday 2 August 2011

Jim Alistair demands apology from "blasphemous" placard waver


Jim Allistair is actually a prick. I mean seriously. He's this right wing nut over here in Northern Ireland who decided to form his own splinter party after his original one decided to cooperate with those of opposing ideologies.

Anyway, at Belfast Gay Pride some parader held up a sign reading "Jesus had two dads, and he turned out fine". He's now demanding an apology claiming that it was "highly offensive."

The man in question had held up the sign at the Christian protesters, from the loving folks at the Free Presbyterian Church. While I agree the sign was genuinely offensive to those of a theistic persuasion, it is still no grounds to demand an apology.

Considering the Presbyterians were at the parade declaring through speaker phones that all homosexuals were inherently sinful despite it being beyond their control and were therefore deserving of eternal torment for the gender they happened to love, *breath*, I don't think Jim has much of a case.

As such I think I'm more than justified in saying there are no grounds for apology, considering it was exercising of free speech, significantly less offensive on the marcher's behalf and there being zero legal grounds.

Sunday 31 July 2011

Sharia Law in London



I find myself in an unusual position in that I'm agreeing with the Daily Mail, a newspaper I'm often at odds with. I read their article about radical Muslim preachers placing the London district of Waltham Forest under Sharia law. These radicals and their younger male followers are reportedly on local patrols, reminding people of their manifesto outlined in the flyer above.

While totally unenforceable and completely irrelevant legally it still represents a growing concern. While the Daily Mail dislikes this because of its stance on immigration and nationalism, I am alarmed simply because these "laws" are based on an immoral theological foundation.

Sharia is distinctly resonant of Old Testament morality: the stoning of adulterers, degradation of women and suppression of free speech. While some moral laws proposed are almost admirable, like the condemnation of murder, others are largely unnecessary in a 21st century city. Take for example the banning of alcohol and gambling. Sure, they cause problems, but not enough to merit their removal from society! People really enjoy them and rarely with negative consequences.

They even outlaw porn because some 5th century madman said it was bad. I can't understand it. I think Stephen Fry puts it well, "sex is fun, it's jolly and people enjoy it. It's a lot like food in that respect. The only people who are obsessed with food are the anorexic and the morbidly obese. And that, ladies and gentlemen, is religion in a nutshell." Provided it's safe (sharia condemns contraception, especially on the part of the female) and consenting, sex is perfectly ok.

I should note that these hate-mongers are a minority. The majority of Muslims in targeted areas don't condone the extremists' actions.

I'm surprised people like this go so public, I echo the thoughts of the Daily Mail journalist when I fear an attack like the one in Norway from these people on the city.

Saturday 30 July 2011

The Endermen


I just read Notch's recent blog post about the new upcoming mob in the Minecraft Adventure Update, and I must say I'm very impressed by what he says about the "Endermen." It makes me feel so relieved, and here's why:

Recently I've felt increasingly disappointed by what Mojang releases in its updates for Minecraft. Most of the things that are added are largely bereft of real use, mostly aesthetic or serving a purpose I already get from something else.

Take wolves for example. They don't do much, just attack mobs and die. Seriously, they don't know to avoid lava. The same is true of the Nether; there is no reason for me to go there besides soulstone.

I've only realised this because of the mods I've been playing with. The Aether Mod shows what the Nether could've been; a whole new dimension with dozens of functional rewards for risking being there. Others like Flan's vehicle mods show the sheer potential of the game. The addition of planes opened whole new structures to be built, like runways and bases in the sky! Unlike most of what Mojang adds (stuff like sandstone and charcoal), Better Than Wolves adds so much functionality and hours of gameplay to explore what can be done. At the minute I'm building a 4-floor elevator and an automated inventory.

But I don't want to say Mojang is bad, I think they are fantastic. Along with Bethesda, Valve and Bioware they're my favourite game developers. I just started to fear that they had reached their pinnacle of content provision a while back.

But that blog post redeemed them for me. The new psychological mechanics revolving around the Enderman mob reminds me why I love this game in the first place.

And that's for the innovative game design! A monster that will only attack after you've stopped paying direct attention to it is pretty creepy, especially in the darkness of Minecraftian night when there's probably an exploding pig mutant behind you.

Which is just one dimension of the game. There are months worth of creative mechanics to exploit, like redstone and pistons. I've been building calculators and automated farms linked by subways simply because I can! This is Minecraft's greatest strength, the ability for the player to create and fulfill their own achievements.

But at the same time it represents its greatest weakness, there is no overarching goal to fighting monsters and exploring. But the adventure update is adding dungeons with weapons/materials as rewards, so this major gripe for people will be more than fixed.

The new stuff coming too I've read about helps, like the NPC villages and hunger mechanics. Notch has so much saved up and I feel bad for ever doubting Mojang's ability.

Thank you, Mojang. I can't wait for Adventure Update.

Friday 29 July 2011

New Scientist Existential Issue


This week's New Scientist issue is simply fantastic. I got it last Tuesday and have read its cover feature twice. Amazing stuff.

It essentially addresses the greatest questions: is there a God? What happened before the Big Bang? How will humanity end? Besides being simply interesting, it contains loads of simple stock arguments for an atheist that are good to be aware of. It answers loads of the questions put to me by theists, such as how everything came from nothing. The articles are contributed to by big names like Daniel Dennett and Stephen Hawking.

Most of the articles are linked too here. Just click on the articles starting with "existence".

Thursday 28 July 2011

Norway shootings and religious belief

I'm sure you're aware of the recent Norway terrorist attacks, one in Oslo and the other at a youth camp on the island of Utoya. It's a tragic thing, and in my view it highlights the dangers of religious belief.

The attacks were carried out by Anders Breivik, a far-left anti-Islam extremist who sought to remove multiculturalism and Islam from Europe to keep it "Christian."


The attacks were intended to raise awareness of his beliefs, not as a direct offense against immigrants in Norway. He thought such an action would only cause the public to sympathise for them. In regards to the civilian wounded and dead, he says it was a "necessary atrocity". His motivations are very disturbing, outlined in his manifesto. I've only read summaries of it, it would take days to go over it all.

It includes instructions on how to arm yourself for anti-Islamic violence in gruesome detail, as well as his militant views against feminism, homosexuality, atheism, political correctness (which he claims is a variant of Marxism) and Islam. There's even a section on how his new world would work, from government to agriculture.

Anders attacked the camp because it was owned by the Norwegian Labour Party, which he disdained for its liberal policies on immigration. His lawyers are pleading clinical insanity because his views and actions are so non-sensical.

I find this disturbing primarily because of how he was motivated; his religious belief. Granted, it was not totally a theological thing, there were political grievances too. But my point is that without religion he wouldn't have so readily threatened by the peaceful "Islamisation" of Europe. No atheist has ever threatened to fly planes into skyscrapers or shoot up schools. A godless rational mind would resort to political activism (of the non-militant kind!) at most.

And many right-wing Christian media have been decrying the Christian motivation, such as Conservapedia and Bill O'Reilly etc.



Which is of course ridiculous. He was certainly a Christian, Bill. His manifesto includes a section of Christian templars he venerates, including Vlad the Impaler.

The point to take from this is that all irrational religious belief is dangerous, even moderate belief. It can act as a gateway to extremism. Usually this is the case for Islam but Anders shows it can happen in Christianity as well.

Wednesday 27 July 2011

Largest water deposit found

Scientists discovered the largest deposit of water ever observed yesterday, bigger than than all the oceans on earth put together and multiplied by a 140 trillion.

This HUGE collection was found in a cloud of the stuff orbiting a quasar 12 billion light years away, with the rather appealing name APM 08279+5255. It just rolls off the tongue.

APM 08279+5255

Studying the radiation from the water orbiting the quasar will be useful in studying how black holes heat up their surroundings, and is also just quite interesting that we've found an intergalactic ocean 10,00 times heavier than the sun.

But Conservapedia have already shat all over this. You know the way in Genesis there was only darkness and water before god waved his magic wand? According to these guys it's evidence that before creation there was only water.

But it gets worse! They go on to say Genesis postulates water as the most abundant substance in the universe, which is of course ridiculous. Despite the fact that this is an isolated vapour cloud and therefore lends no statistical significance, the quasar it orbits must be heavier than it, or it be the other way around. And this quasar is by default made of collapsed clouds of hydrogen! Not water!

Monday 25 July 2011

"Quantum Jumping"

When I saw this I raged. So hard. I struggled to remember something more bullshit than this.


Yes, what you just read is an actual product. People not only believe this, they pay for it too.

This Burt Goldman is nothing more than a conman. Or a deluded individual. I'm not sure which.

He claims that the multiple worlds interpretation of quantum theory is true beyond reasonable doubt and that you can contact the infinite number of "yous" in these universes. Apparently, you can do it because your mind can manipulate matter and energy which he claims are manifestations of thought. He goes on to say you can extract mindsets and skills from another self. For example, if you want to be rich then talk to an alternative "you" whom is better at saving money.

This is of course complete and utter nonsense. The multiple worlds interpretation is not proven beyond reasonable doubt, it's not even the likeliest to be correct. That title goes to the Copenhagen interpretation.

And even if we did assume it to be correct it is still madness to claim all mass and energy to be manifestations of "thought". This Goldman asshole even has the nerve to quote Max Plank on this, using the great scientist to justify his bullshit.

"German physicist and one of the founding fathers of Quantum Theory, Max Planck, said that all matter originates and exists only by virtue of a force which brings the particles of an atom to vibration which holds the atom together. We must assume behind this force is the existence of a conscious and intelligent mind. This mind is the matrix of all matter.

In other words, the substance of the universe, of your reality, may be nothing more than consciousness or thought. Consciousness forms the building blocks of the universe and everywhere that consciousness explores, with the expectation that something will be there, it also creates. If Quantum Theory is correct, it implies that to change your current reality, all you need to do is change the frequency of your thoughts."

Planck was using a deistic metaphor to describe the nature of the quantum world being able to be expressed through matrix mathematics, that's all. He was in no way postulating that mass and energy was thought and it is in no way possible to extract from this that your mind influences quantum reality.

How could the frequency of thought, the rate of ion flow in neurons, possibly punch a hole to an alternate universe? I can thick of no conceivable physical mechanism, bullshit or otherwise.

I fucking hate it when people take genuine scientific thought and twist it to make some ridiculous idea seem credible. This is the very manifestation of the dangers if scientific illiteracy.

Ugh... rant over.

...

Quantum Jumping, REALLY?

Sunday 24 July 2011

LHC found something?


For those of you like me who have been following the LHC since it turned on in 2008, hoping for it to deliver with something ground-breaking might just be done waiting.

It was announced on Friday evening a blip was found in recent data. Detected by both CMS and ATLAS, this blip occured around 120-140 GeV (gigaelectronvolts). This indicates an unusually high occurrence of W boson pairs, the weak nuclear force carriers. Similar patterns were found for corresponding photons and Z bosons.

This is exciting because these particles could be due to the decay of Higgs particles of masses around 120-140 GeV, and if this is verified then the evidence for the Higgs field (our best theory as to why things have mass) would be stronger.

Of course we can't get ahead of ourselves. The scientists at CERN still head to look into this more thoroughly. Back in April it was thought Higgs evidence was found too and it turned out to be a false alarm.

Personally, I'm hopeful. Unlike the last blip this one was announced by CERN, not leaked. I think this indicates the professionals are considering backing this. It'd be really cool to have Higgs evidence by the end of the summer.

Thursday 21 July 2011

Atlantis ends final mission



Whenever I was little I was obsessed with outer space. I used to go to the library and take all the books on space I could find. It was a Sagan-esque fascination, awed by the sheer scale of the universe and the science explaining it.

Which is why it makes me sad that NASA has ended its 30 year space shuttle program. Today, for the last time, shuttle Atlantis touched down at the Kennedy Space Centre after delivering a replacement waste removal system and vital supplies to the ISS.

The project put the Hubble Space Telescope into orbit and allowed construction of the ISS to be possible. I was at the Kennedy Space Centre last year and saw this shuttle, so for me it feels like an end of an era I've always been so enarmoured with. Especially since Congress is planning to cancel the James Webb Space Telescope, Hubble's successor.

But that's not to say the future of human space flight is in jeopardy! Obama has outlined America's plans for the future, handing pioneering space exploration to private companies. They want private craft to dock at the ISS and as an incentive the last Atlantis crew left the first flight's flag on board to be taken back by the first to get there.


It's kind of like capture the flag. In the mean time, NASA astronauts will have to rely on their Russian partners to get into orbit and back.

So yeah, no more NASA shuttles for a while and Mars is even longer off. But, commercial interest might just speed up the process and now, through science, international relations can only improve. Overall I think I'm ok with this.

Monday 18 July 2011

"Question evolution!" campaign

Ugh, I've been seeing a lot of this around the net as of late. Especially from that idiot shockofgod and the intellectual cesspool Conservapedia.

They're both advocating this "Question Evolution!" campaign, which is basically raising awareness of intelligent design by bashing Darwin. They distribute pamphlets with 15 questions they claim evolutionists cannot answer, and thus creationism must be correct.

Besides their god-of-the-gaps thinking, evolutionists can answer them very well and that includes me. And so I'll do it here, a recorded document of an evolutionist adequately answering all 15: (some are somewhat fractured in the text, so please forgive me paraphrasing. I'll try and maintain all original meaning)

1. How did life originate? Biologists do not know exactly the details of the first thing that could be called "life", and we admit that. Whatever it was is largely untestable, and the same is true for every theory that tries to explain the origin of life. However, that is not to say we don't have a very good idea. Whatever it was must have been capable of replicating itself, and could also have the ability to catalyse reactions. Personally, my money would be on enzymes of RNA (ribozymes, go look them up) and I recall Richard Dawkins holds a similar view. And we know similar molecules can arise from the primordial soup, see the Miller experiment.

The question goes on to say how a cell could arise from molecules, and the answer is in the theory. Research what you reject, please. It arose from natural selection, some of these self replicating molecules may, by sheer chance, may be slightly different and as such perform slightly different tasks. Perhaps they may have produced membranes, metabolised for heat or may have simply just have been faster at reproducing. Molecules working together would also have been selected for and so increase in frequency. This process would've continued to form the first prokaryotic cell.

And even if we didn't know this it is not valid to say that "god did it." Scientists are at the very least looking at it and increasing our understanding of abiogenesis. Unlike religious folk who relentlessly assert intelligent design with no evidence whatsoever. (Dammit, I'm getting carried away! 3 paragraphs on just question 1...)

2. How did the DNA code originate? This answer will be much shorter! See above. DNA bases arose by chance like the first amino acids. It can't be said it was an unlikely chance, the primordial sea was huge, and had millions (if not billions) of years to occur. Eventually, by hugely likely chance these molecules will work together, replicate and increase in frequency. This gradual process builds in complexity until we have a genetic code.

3. How could such errors (mutations the genetic code) create 3 billion letters of DNA information to change a microbe into a microbiologist? The vast majority of mutations have a very small effect on the protein they code for. The functioning shape of the peptide chain is largely unchanged, and many changes are protected due to the degenerate nature of the code. However, in the off chance of a change that makes the protein more efficient or give it a new function (probably a reduntant protein previously) then it will be selected for. It doesn't matter if it beomes x1.1 times as efficient or x1,000,000 as efficient, any positive change will be selected for. Thus largely varying and useful genes can arise.

You make the valid point of the existence of genetic diseases. To that I respond natural selection is not all powerful, negative changes can reproduce. The laryngeal nerve is more than enough proof of that. This is also why varying alleles exist. Not every version of a gene can be the best, yet different genotypes can still perpetuate.

4. Why is natural selection (a principle accepted by creationists) taught as evolution as if it explains the origin of the diversity of life and explains the origin of the traits that make an organism adapted to an environment? Genes have been observed to be duplicated and then mutate, to form a new allele to be passed on that could lead to a whole new phenotype. Natural selection then selects for or against this new phenotype. This mutation in the genome isn't natural selection in itself, yes, but the follow up process makes it very much a "creative process."

5. How did new biochemical pathways, which involve multiple enzymes working together in sequence, originate? I am fairly sure I've covered this in regard to the origin of life and the DNA code, so I'll answer in more emphatically. There are millions of years for these pathways to originate, and small changes to them due to mutation arise over time. Take the electron transport chain for example. In the past it would've produced far less ATP (the energy molecule for life), be less complex and probably have vastly different products/substrates. There is so much time for the random collection of ever-changing enzymes to find a useful function that eventually a useful biochemical pathway will occur, be passed on and eventually refined.

6. Living things look like they were designed, so how do evolutionists know that they were not designed? This is the first genuinely fucking stupid question so far. Because there is no evidence that they were designed! If you waltz in to the scientific community, claiming life was designed it is you who must endure the burden of proof, not us. We have our own theory and our own evidence for it. Besides, your theory makes a move from no complexity to great complexity instantaneously, without explaining the complexity of your supposed designer. Therefore it is improbable. Evolution by natural selection however, provides a slow, steady and (most importantly) probable increase in complexity. Read "Climbing Mount Improbable" by Richard Dawkins, it explains this in great depth.

7. How did multi-cellular life originate? Easy. Unicellular organisms clump together and gain benefits from shared labour, becoming increasing specialised. A study actually observed this happening.


8. How did sex originate? You raise two points, firstly the benefits and the future compatibility of evolved sex organs. In regards to the advantages of sex over asexual reproduction is the huge increase in genetic variability due to independent assortment of chromosomes and bivalance while making the sex cells. A more varied population can better adapt to changes and thus survive and become less susceptible to disease (an asexual reproducing population struck by a virus suited to their genotype wouldn't last long).

Secondly, sexual reproduction evolved waaaaaay before genitalia did. Some micro-organisms do it (if you pardon the pun) and there's no such thing as a micropenis! They exchange plasmids instead. Complementary sex organs had so much time to evolve and improve this process. The idea of future compatibility is irrelevant because to evolution non-complementary immediate sex organs wouldn't be acceptable, so the notion of their future state is a foregone conclusion.


9. Why are the (expected) countless millions of transitional fossils missing? This is a stupid question. Every single fossil is a transitional fossil. Creationists quote this from one another, never going to look at the fossils we have at any decent museum/university (or even online). If you wanna know how the reptile became a mammal or fish an amphibian go look, we have a great deal of transitional forms.

But that would never satisfy you! As soon as we plug a gap (which was never there, really) it just creates two more for creationists to point to, thinking it justifies their position. Reading theh follow up text in this question sickens me, they claim the tree of life (below) is the product of imagination. Bull. Shit.


Before Watson and Crick we relied upon geographic and fossil evidence to construct this tree, so yes, there was a degree of guesswork. NOW, however, we have DNA evidence. This allowed us to refine the tree with almost absolute certainty, being confident of the animals placement with an error of less than of one in a million.


10. How do ‘living fossils’ remain unchanged over supposed hundreds of millions of years if evolution has changed worms into humans in the same time frame? For readers who are unaware of "living fossils", it's an informal term used to refer to species that have remained largely unchanged by evolution for a long time. Cockroaches and deep sea sharks are good examples.

And this question couldn't be easier to answer. Evolution can only occur when there is a directionally selective pressure, i.e. acting in favour of a trait's extremity. A crude example would be giraffes, as their ancestors would have been selected for by having longer necks. Directional selection happens in response to a changed enviornment. Living fossils have not undergone this kind of selection because the enviornment they inhabit hasn't changed for millions of years as well, there is no force making them change. You are at huge fault to assume everything evolves at the same rate.

11. How did blind chemistry create mind/intelligence, meaning, altruism and morality? Ancient roaming bands of our ancestors would've easily evolved a societal behaviour, like don't kill your neighbour nor rape their children. The ones who dis such things would've reciprocated the same kind of treatment and become less likely to reproduce. Now that we have advanced culture, we have sophisticated this ideas into what we call morality.

The mind/intelligence bit is because our brains are denser. Better brains, better cognitive awareness, better tool use. Simple.


12. Why is evolutionary ‘just-so’ story-telling tolerated? Because it's probably true based on the observed facts, and there is no better theory. Including intelligent design.

13. Where are the scientific breakthroughs due to evolution? Firstly, there's hundreds. We've mapped life, predicted and prepared for superbugs, understanding of the origin of disease... etc.

Secondly, even if there wasn't any discoveries because of evolution that wouldn't mean it isn't true. It's like a child complaining about what the point is in studying history! It is true there are no practical applications, but we do it anyway! Knowledge of why things around you are the way they are is important. So shut up and learn!


14. Science involves experimenting to figure out how things work; how they operate. Why is evolution, a theory about history, taught as if it is the same as this operational science? Before I explain why you're wrong for the penultimate time I'll turn this faulty logic back on intelligent design. Why is intelligent design put forward as if it is operational science? Can we observe the organisms being designed/created? No, we simply cannot.

You have the nerve to quote Dawkins here, “Evolution has been observed. It’s just that it hasn’t been observed while it’s happening.” The follow-up to this is a full rendition of why we still know. Your quote-mining is sickening. He uses the metaphor of a detective arriving at a crime scene. The detective can still piece together the evidence of what happened to convict the criminal despite not witnessing the events. In the same way we can piece together the evidence for evolution. We never saw Darwin's finches moving from island to island but we can map their genes and geographic distribution, work out who evolved form who and when.

Furthermore, technically evolution has been observed before our very eyes. I point you to the Lenski experiments and resulting exchange between Dr. Lenski and that twat Schlafy.

15. Why is a fundamentally religious idea, a dogmatic belief system that fails to explain the evidence, taught in science classes? The thing is, it's not a religious idea. It's a scientific one. It is based on evidence and subject to review constantly, and that's what separates science from faith. By your logic, is Newton's theory of gravitation a religious idea too? Should we be praying to Einstein and Feynmann while we're at it? I find it fundamentally fucking offensive that you dare compare Darwin's beautiful explanation for the origin of species to your own bronze age bullshit.

And there we have it! All 15 answered. Which gives me the idea of writing 15 questions for creationists to answer. Hmmm...

Monday 11 July 2011

I hate this time of year

(If only the LOL in the image stood for "laugh out loud", in this context it means "loyal orange lodge")

Tomorrow is the 12th of July and to the enlightened world that isn't a significant date. However, here in the backwards province of Northern Ireland half the population feels the need to celebrate an obscure and inconsequential event in history that for the most part they don't understand.

For those of you who don't know (and I envy you), protestant unionists in NI have parades on the 12th July to celebrate the victory of William of Orange at the Battle of the Boyne, where he defeated his catholic rival for the English throne in Ireland. Unionists in NI celebrate this every year about this time and all it ever does is piss off the catholic nationalists.

They jumped on this event like insects to a lamp, yet it barely represents what they think it does. For one thing, William never gave a flying fuck about Ulster protestants, his only interest was in shutting Ireland up so he could concentrate on other wars. It in no way represented a victory of English loyalism over Irish nationalism, the pope even backed William! And yet they burn the effigy of his Holiness every year.

Flags go up everywhere, the unionists even put up Israeli flags in response to the nationalists flying Palestinian ones. Such disgusting self-aggrandisement; no community here can identify with that conflict in the middle-east.

The bonfires just get bigger every year, the one in Ballykeel is easlily 30m ,and if it were to topple it would set alight the whole settlement. At least that would be them burning their own homes down, not just the nationalists.

Look at all the bullshit so far already, over fucking flags. It makes me feel ashamed to be associated with this tiny country that is so divided over such obscure differences. I can't follow the logical pathway that leads someone to care so much about something as arbitrary as a country's allegiance.

Anyway, rant over. This time of year always puts me in a bad mood.

Thursday 7 July 2011

First synthetic organ transplant

Yay! First post with actual content! I felt this was worth sharing.

Surgeons in Sweden have just confirmed the first successful transplant of a lab-grown human organ. The organ in question was a trachea (the windpipe leading to your lungs).


Scientists from London literally sculpted trachea tissue into an exact copy of the patient's from 3D scans, with two more airways budding off it. Once it reached Sweden it was bathed in the patients' stem cells.

And that is what made it so brilliant, the trachea was transformed by the stem cells into the patient's own tissue! No donor and no risk of rejection! Reportedly, the patient is recovering well and there weren't any post-surgery complications.

This is pioneering work, just think of all the good that could come from work like this. Need a kidney? A safe one gets grown for you. Lost loads of blood? No problem, we have whole vats of O negative.

Now if only religious folk would back off from stem cell research with their half-baked world views. I've meet people opposed to the idea of such research at all, regardless of where the cells are sourced. It's just too taboo, apparently. Don't they know most research currently involves animal cells? I was unaware the rights of an unborn rat was more important than human welfare.

And so ends my first real blog entry. I suppose I'm now one of those pretentious internet twats now, right?

Wednesday 6 July 2011

About me and my blog

Welcome to The Lonely Genome, my opinion-ridden corner of the internet. I'm Adam Henry, a nerdy wannabe scientist with more opinions than is healthy. I'm an atheist, liberal and gay. Essentially, I'm as stereotypically left as you can be.

I just left secondary school and by October I'll be studying genetics at Queens University Belfast. Hopefully by the end of it I'll be heading into a career in scientific research fully armed with a doctorate.

I'm from Northern Ireland, which I always felt to be about a few decades behind the rest of the western world (but that's for another time). I'm nestled pretty deep in the "Bible Belt" and had a fairly normal christian upbringing, which if anything catalysed my conversion to secularism.

I love to write, mostly my thoughts on things and sci-fi stories (I have a fictional universe in my head, how nerdy is that?), but I had no productive avenue for what I was writing. Hence, The Lonely Genome was created with the first free blogging service on Google.

In theory this blog will be filled with my day to day thoughts on current events, personal developments and other stuff I'm into (typical nerdy stuff like science, video games, books, technology and what have you). I'll probably post some musings on the goings-on of the atheist and gay movements, too.

The name is fairly meaningful. A friend of mine noted how me wanting to be a geneticist was ironic, because as a homosexual I'll probably never pass on my own genes (especially since I'm opposed to IVF and surrogate pregnancy). And so my blog is named in reference to this incongruity. My genome is doomed to never have the companionship of other gametes.

Anyway, I hope anyone who ever reads my blog enjoys it. I'm sure as hell looking forward to writing it.